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Current Code

MOD Fish Library GitHub repository

Realtime data streamer and simulator

Git Workflow for Cruises

🖥️ Software for TFO 2024 - Google Drive

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Deployment Logs and Checklists

FCTD deployment checklist

Epsi deployment checklist

Example deployment log (spreadsheet)

Printable deployment logsheets

Cruise Watch Notes and Documentation Watch Schedule

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Real-time at-sea data collection and processing

Computer station setup

Collecting data at sea: From computer set up to epsilon plots

Communicating directly with fish

Epsi minnow

Epsi Liveplotter python script

Start an Epsi minnow deployment

Epsi mako

FastCTD

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Post-processing

Epsi minnow

Process epsi minnow deployment

Epsi mako

Process/reprocess a full Epsi Mako deployment

FastCTD

Process a full FCTD deployment

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🧰 Troubleshooting

MOD Fish Troubleshooting

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Old How-tos

Start a realtime FastCTD or Epsi Mako deployment (old - uses python scripts)

🍃 Overleaf Epsi Processing Manual

Data organization

Computer Station set up and cheat sheet

Check spectra from incoming data (FastCTD and Epsi Mako)

Check spectra from SD card data (Epsi Minnow)

Start a realtime FastCTD or Epsi Mako deployment

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🚧 Code in progress

MODfish_lib directory

Plotting functions

📚 Mixing Theory

Why are we measuring epsilon?

Wiki maintained by Nicole Couto | ncouto AT ucsd.edu